YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50750752
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.91
Transmembrane Helix	45	63	0.92
Non-Cytoplasmic	64	78	0.79
Transmembrane Helix	79	100	0.89
Cytoplasmic	101	214	0.98
Transmembrane Helix	215	235	0.86
Non-Cytoplasmic	236	243	0.83
Transmembrane Helix	244	265	0.94
Cytoplasmic	266	272	0.90
Transmembrane Helix	273	295	0.88
Non-Cytoplasmic	296	304	0.86
Transmembrane Helix	305	324	0.96
Cytoplasmic	325	335	0.93
Transmembrane Helix	336	358	0.89
Non-Cytoplasmic	359	370	0.80
Transmembrane Helix	371	394	0.73
Cytoplasmic	395	395	0.49
Transmembrane Helix	396	418	0.82
Non-Cytoplasmic	419	428	0.63
Transmembrane Helix	429	452	0.89
Cytoplasmic	453	502	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAASITGKT KAVPSVGKPW LQMVWVFVMN RMSSQSSSSS QRRRMALGIV ILLLVDVIWV  60
   61 ASSELTSYVF TKYNKPFFST FAKTSMFVLY LLGFIVWKPW RQQCTRGFRG RHAAFFADAE 120
  121 GYFAACTTDN AVNSSLSEPL YVPVKFHDLP TEKSGSNNND TEKTPKKPRV RFSNIMEIRQ 180
  181 LPSSHALEAK LSRMSYPAVK EQESILKTVG KLTATQVAKI SFFFCFVWFL ANFSYQEALS 240
  241 DTQVAIVNIL SSTSGLFTLI LAAVFPSNSG DRFTLSKLLA VFLSIGGVVL VNLSGSEKSP 300
  301 GRDTIGSLWS LVGAMLYAVY IVMIKRKVDR EDKLDIPMFF GFVGLFNLLL LWPGFFLLHY 360
  361 TGFEAFEFPS KLIWMCIVIN GLIGTVLSEF LWLWGCFLTS SLIGTLALSL TIPLSIIADM 420
  421 CMQKVQFSWL FFAGAVPVFF SFFIVTLLCH YNNWDPVMVG IRRVFAFICR KHRIQRMPEE 480
  481 SEQCESLIPM HSVSQDGDSC CS