YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50750427
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGTVSAGG WENTPTRMQE ADVNCAVRSL GLRVTQGGPG DRERAASGLQ PCGGELRAGG  60
   61 GRGRRRGLSI EGAWLNGGVA KVGVVKWGAW GGSPPPPLPN GVGIKTSPFA WRGQGSPAGS 120
  121 SWCEGRCDLR VLAAQGHAQA SCERAFIHLR LAAFPSPGRG CAFSGSGIHF GGFYFSVLKH 180
  181 TSLPARLFGS YVVADLVPSL SIRAGSRILY RPISASVFSR PEVRTGEGKS TLNGAQNAVS 240
  241 QLALREFQTS AVSRDIDTAA KFIGAGAATV GVAGSGAGIG TVFGSLIIGY ARNPSLKQQL 300
  301 FSYAILGFAL SEAMGLFCLM VAFLILFAM

Type	Start	End	Confidence
Cytoplasmic	1	155	0.69
Transmembrane Helix	156	178	0.63
Non-Cytoplasmic	179	186	0.41
Transmembrane Helix	187	202	0.40
Cytoplasmic	203	261	0.67
Transmembrane Helix	262	288	0.81
Non-Cytoplasmic	289	302	0.61
Transmembrane Helix	303	327	0.91
Cytoplasmic	328	329	0.60