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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50750387
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQADWFCAE SIWHFYSQAL GYQPNGLVTN GLPGIGYTNH PDYTGQQAFH SDYLTQQLLG  60
   61 CRVAEQGAVD DSELGAGQKR AEPSSAVPGD LAAEPANFSE TTGGWCAAKM SSEEKSISPA 120
  121 HKTSTPSHRS ASSSSSSQRD RRQDNTDEAA LVQEVLNTLN GSNSLEQTIL LRELKNEVVK 180
  181 LSVNLLERKA SSGSTDPSLS KQFLEADPIS LSKQEPDSWE IIEGLKIGQT NVQKPDKHEG 240
  241 FMLKKRKWPL KGWHKGKAAQ RNKGVAMTLI GIVTLALMCL FLVAAPMKRF FVLDNGLLKY 300
  301 SKSPIDIQKG KVHGSIDVGL SVMSIKKKAR RIDLDTEEHI YHLKVKSQDT FDAWVSKLRH 360
  361 HRLYRQNEIV RSPRDASFHI FPSASTTESS PAANVPDGKV QQNSFPWQSP IPCSNSLPAT 420
  421 CTTGQSKVAA WLQDSEEMDR CAEDLAHCQS NLVELSKLLQ NLEILQRTQS APNFTDMQAN 480
  481 CVDISKKDKR VTRRWRTKSV SKDAKIQLQE GPAPKGQFST TRRRQRLAAA VATTVPFSAT 540
  541 MSPVRLHSSN PNLCADIEFQ TPPSHVTDPL ECSTEYMKLQ EEFCLMAQKV HSLLKSAFNS 600
  601 IAIEKEKLKQ IVSEQDLTGH NAQIAHLRQS LSQALNQNAE LRSRLNRIHS ESVICDQVVS 660
  661 VNIIPSPDET GEQIHVSLPL SQQVSNESRL SMSESVSEFF DAQEVLLSAS SSENEASDDE 720
  721 SYISDVSDNI SEDNTSVADI SRQIVNGELT GGAFRNGRRT CLPAPSPDTS NINLWNILRN 780
  781 NIGKDLSKVS MPVELNEPLN TLQHLCEELE YSELLDKAAE TDDPYERMVL IAAFAASGYA 840
  841 STYFRAGSKP FNPVLGETYE CIREDKGFRF FSEQVSHHPP ISACHCESKN FVFWQDIRWK 900
  901 NKFWGKSMEI LPVGTLNVTL PKYGDYYVWN KVTTCIHNIL SGRRWIEHYG EITIRNTKSS 960
  961 VCICKLTFVK VNYWNSNVNE VQGVVIDQEG KVVHRLFGKW HEGLYCGVAP SAKCVWRPGS1020
 1021 MPTNYERYYG FTRFAIELNE LDPVLKDLLP TTDARFRPDQ RLLEEGNIEA AASEKQRIEE1080
 1081 LQRSRRRYME ENSIEYVPKF FKKVIDANQR EAWVTNETYW ELRKDPGFSK VEIPVLW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle