YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSAVFSLS PSLPLLKPRR LSLRHHPITT AASSSDLNVS PNVVSIPSLS RRSWRLASSD  60
   61 SPLRAWSGVP SPISHSLDTN RFRTAATAVP ESAEEGDNSG KLTKVLELGL LFAMWYLFNI 120
  121 YFNIYNKQVL KALHAPMTVT LVQFAVGSVL ITIMWVLNLY KRPKISGAQL AAILPLAVVH 180
  181 TLGNLFTNMS LGKVSVSFTH TIKAMEPFFS VLLSAMFLGE KPTPWVLGAI VPIVGGVALA 240
  241 SISEVSFNWA GFSSAMASNL TNQSRNVLSK KVMVKKDDSL DNITLFSIIT LMSLVLMAPV 300
  301 TFFTEGIKFT PSYIQSAGVN VKQIYTKSLI AALCFHAYQQ VSYMILARVS PVTHSVGNCV 360
  361 KRVVVIVSSV IFFKTPVSPV NAFGTGIALA GVFLYSRVKG IKPKPKTA

Type	Start	End	Confidence
Cytoplasmic	1	104	0.92
Transmembrane Helix	105	125	0.81
Non-Cytoplasmic	126	136	0.72
Transmembrane Helix	137	157	0.92
Cytoplasmic	158	166	0.71
Transmembrane Helix	167	187	0.84
Non-Cytoplasmic	188	198	0.68
Transmembrane Helix	199	218	0.57
Cytoplasmic	219	224	0.49
Transmembrane Helix	225	247	0.87
Non-Cytoplasmic	248	282	0.50
Transmembrane Helix	283	304	0.91
Cytoplasmic	305	323	0.47
Transmembrane Helix	324	339	0.47
Non-Cytoplasmic	340	376	0.78
Transmembrane Helix	377	398	0.82
Cytoplasmic	399	408	0.90