YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBP27_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRRGSETK AIVCVLTDRI RISNQWVSHL SFAGLLGVAG FVFAQQHGLF RNLNNLKLFS  60
   61 GREKDSGDDS FLVPGLQNLG NNCFLNVILQ ALASCKDFRS FLQWVLEDAR GSLAGEQEEQ 120
  121 LPLTFALSAL LQELGTVGSR RSVSNPRKVM VTLTDYAKNF NLTSQQDAAE ALLHLISSLQ 180
  181 EEIVVCYRPS QSSNLSDILF SRNLRMLAPS EGLHGLMELK RWHKHLRGPF DGILGSTLMC 240
  241 RTCSSQISLE FQFFHTLPLS PLLHHGGYNI MSGCTLEHCL KKFLNTEKVE NYFCYRCWHG 300
  301 AALKYLSVIG AAETEIEKLR SCGGEDQCDC KTSLHLQRMP WSNSYSHILK QLIIARFPKL 360
  361 LCIQVQRASF NMFEEFKLSG HIAFPLVLNL SLFTPSSIGV NIEERIEMSS EYQKPEASKN 420
  421 HGMYRLVTVV EHFGRTGSGH YTVYRSVRVF SQEEEEEDCD EDLSWFSISD SEVCRVSESD 480
  481 VLGAEASLLF YERL

Type	Start	End	Confidence
Cytoplasmic	1	25	0.86
Transmembrane Helix	26	45	0.83
Non-Cytoplasmic	46	494	0.95