YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNC2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDLDLESI SEATSGAIGS LLSTTILYPL DTCKSKFQAE IRVRGQQKYR YLSDVFWEAI  60
   61 SSGNVLSLYQ GLGTKNLQSF ISSFIYFYSY SYFKRLHSQR IGSKSIGTKA NLLIAAAAGA 120
  121 CTSVLTQPLD TASSRMQTSE FGKSKGLWKT LTDGSWGNAF DGLGISLLLT SNPAIQYTVF 180
  181 DQLKQNLLEK GKAKSNKDSS PVVLSAFMAF VLGAVSKSAA TVITYPAIRC KVMIQAADDS 240
  241 KENEAKKPRK RIRKTIPGVV YAIWKKEGIL GFFKGLQAQI LKTVLSSALL LMIKEKITAT 300
  301 TWILILAIRT LFVTKARLKS P

Type	Start	End	Confidence
Cytoplasmic	1	109	0.56
Transmembrane Helix	110	126	0.62
Non-Cytoplasmic	127	296	0.63
Transmembrane Helix	297	313	0.52
Cytoplasmic	314	321	0.50