YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLST4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.99
Transmembrane Helix	103	125	0.91
Non-Cytoplasmic	126	144	0.95
Transmembrane Helix	145	167	0.91
Cytoplasmic	168	175	0.89
Transmembrane Helix	176	197	0.89
Non-Cytoplasmic	198	202	0.74
Transmembrane Helix	203	223	0.92
Cytoplasmic	224	234	0.84
Transmembrane Helix	235	256	0.90
Non-Cytoplasmic	257	262	0.73
Transmembrane Helix	263	283	0.92
Cytoplasmic	284	341	0.97
Transmembrane Helix	342	365	0.83
Non-Cytoplasmic	366	380	0.80
Transmembrane Helix	381	401	0.91
Cytoplasmic	402	409	0.88
Transmembrane Helix	410	431	0.92
Non-Cytoplasmic	432	440	0.70
Transmembrane Helix	441	465	0.84
Cytoplasmic	466	476	0.87
Transmembrane Helix	477	499	0.88
Non-Cytoplasmic	500	504	0.82
Transmembrane Helix	505	525	0.91
Cytoplasmic	526	546	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSTYAVKG NAAFAFQRRT FSSDRSTTST GIRFAGYKSL ATTGPLYCSG SEAMGATLAR  60
   61 ADNGIQSVMS FSSVKARSVR AQASSDGDEE EAIPLRSEGK SSGTVLPFVG VACLGAILFG 120
  121 YHLGVVNGAL EYLAKDLGIA ENTVLQGWIV SSLLAGATVG SFTGGALADK FGRTRTFQLD 180
  181 AIPLAIGAFL CATAQSVQTM IVGRLLAGIG IGISSAIVPL YISEISPTEI RGALGSVNQL 240
  241 FICIGILAAL IAGLPLAANP LWWRTMFGVA VIPSVLLAIG MAFSPESPRW LVQQGKVSEA 300
  301 EKAIKTLYGK ERVVELVRDL SASGQGSSEP EAGWFDLFSS RYWKVVSVGA ALFLFQQLAG 360
  361 INAVVYYSTS VFRSAGIQSD VAASALVGAS NVFGTAVASS LMDKMGRKSL LLTSFGGMAL 420
  421 SMLLLSLSFT WKALAAYSGT LAVVGTVLYV LSFSLGAGPV PALLLPEIFA SRIRAKAVAL 480
  481 SLGMHWISNF VIGLYFLSVV TKFGISSVYL GFAGVCVLAV LYIAGNVVET KGRSLEEIEL 540
  541 ALTSGA