YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSL3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE  60
   61 IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT DFAYTSNNRS ELCDPKPSLL 120
  121 DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND 180
  181 LDIDDEGNVY FTDSSSFFQR RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS 240
  241 LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR 300
  301 NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV 360
  361 VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Type	Start	End	Confidence
Signal Peptide	1	25	0.80
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	390	0.99