YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPA8_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLRDVKPI KLIFSIFCLV IILSACNSTA ELPRFVQPPE PDGSLSFLVV GDWGRRGSYN  60
   61 QSQVALQMGK IGKDLNIDFL ISTGDNFYDD GIISPYDSQF QDSFTNIYTA TSLQKPWYNV 120
  121 LGNHDYRGNV YAQLSPILRD LDCRWICLRS YVVNAEIVDI FFVDTTPFVD RYFDEPKDHV 180
  181 YDWRGVLPRN KYLNSLLTDV DVALQESMAK WKIVVGHHTI KSAGHHGNTI ELEKQLLPIL 240
  241 EANEVDLYIN GHDHCLEHIS SINSGIQFMT SGGGSKAWKG DVNDWNPQEM RFYYDGQGFM 300
  301 SVYTSEAELR VVFYDGLGHV LHRWSTLKNG VYSDI

Type	Start	End	Confidence
Signal Peptide	1	30	0.86
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	335	0.99