YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SD25_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGVFIVIVT CLVFLPDPLR AGVASIGSIT PGFGGSQMNY INNDGIFLES NNSAFGFGFV  60
   61 TTQDSVTLFT LSIIHKSSTK LIWSANRASP VSNSDKFVFD DNGNVVMEGT EVWRLDNSGK 120
  121 NASRIELRDS GNLVVVSVDG TSIWESFDHP TDTLITNQAF KEGMKLTSSP SSSNMTYALE 180
  181 IKSGDMVLSV NSLTPQVYWS MANARERIIN KDGGVVTSSS LLGNSWRFFD QKQVLLWQFV 240
  241 FSDNKDDNTT WIAVLGNNGV ISFSNLGSGA SAADSSTKIP SDLCGTPEPC GPYYVCSGSK 300
  301 VCGCVSGLSR ARSDCKTGIT SPCKKTKDNA TLPLQLVSAG DGVDYFALGY APPFSKKTDL 360
  361 DSCKEFCHNN CSCLGLFFQN SSGNCFLFDY IGSFKTSGNG GSGFVSYIKI ASTGSGGGDN 420
  421 GEDDGKHFPY VVIIVVVTVF IIAVLIFVAF RIHKRKKMIL EAPQESSEED NFLENLSGMP 480
  481 IRFAYKDLQS ATNNFSVKLG QGGFGSVYEG TLPDGSRLAV KKLEGIGQGK KEFRAEVSII 540
  541 GSIHHLHLVR LRGFCAEGAH RLLAYEFLSK GSLERWIFRK KDGDVLLDWD TRFNIALGTA 600
  601 KGLAYLHEDC DARIVHCDIK PENILLDDNF NAKVSDFGLA KLMTREQSHV FTTMRGTRGY 660
  661 LAPEWITNYA ISEKSDVYSY GMVLLELIGG RKNYDPSETS EKCHFPSFAF KKMEEGKLMD 720
  721 IVDGKMKNVD VTDERVQRAM KTALWCIQED MQTRPSMSKV VQMLEGVFPV VQPPSSSTMG 780
  781 SRLYSSFFKS ISEDGGATTS SGPSDCNSEN YLSAVRLSGP R

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle