YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21281081, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSLSLHSS FVPSFADLSD RGLISKNSPT SVSISKVPTW EKKQISNRNS FKLNCVMEKS  60
   61 VDAMNIKEEA SVSTLLVNLD NKFDPFDAMS TPLYQTATFK QPSAIENGPY DYTRSGNPTR 120
  121 DALESLLAKL DKADRAFCFT SGMAALSAVT HLIKNGEEIV AGDDVYGGSD RLLSQVVPRS 180
  181 GVVVKRVNTT KLDEVAAAIG PQTKLVWLES PTNPRQQISD IRKISEMAHA QGALVLVDNS 240
  241 IMSPVLSRPL ELGADIVMHS ATKFIAGHSD VMAGVLAVKG EKLAKEVYFL QNSEGSGLAP 300
  301 FDCWLCLRGI KTMALRIEKQ QENARKIAMY LSSHPRVKKV YYAGLPDHPG HHLHFSQAKG 360
  361 AGSVFSFITG SVALSKHLVE TTKYFSIAVS FGSVKSLISM PCFMSHASIP AEVREARGLT 420
  421 EDLVRISAGI EDVDDLISDL DIAFKTFPL

Type	Start	End	Confidence
Signal Peptide	1	16	0.86
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	449	0.99