YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRO6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	47	0.92
Non-Cytoplasmic	48	68	0.91
Transmembrane Helix	69	92	0.92
Cytoplasmic	93	111	0.93
Transmembrane Helix	112	145	0.80
Non-Cytoplasmic	146	172	0.74
Transmembrane Helix	173	194	0.86
Cytoplasmic	195	214	0.64
Transmembrane Helix	215	238	0.90
Non-Cytoplasmic	239	250	0.61
Transmembrane Helix	251	272	0.92
Cytoplasmic	273	283	0.62
Transmembrane Helix	284	303	0.78
Non-Cytoplasmic	304	305	0.54
Transmembrane Helix	306	324	0.78
Cytoplasmic	325	359	0.73
Transmembrane Helix	360	376	0.36
Non-Cytoplasmic	377	446	0.66
Transmembrane Helix	447	469	0.72
Cytoplasmic	470	566	0.80
Transmembrane Helix	567	591	0.86
Non-Cytoplasmic	592	602	0.70
Transmembrane Helix	603	625	0.93
Cytoplasmic	626	738	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDYETPLLS KDSSSSSSVI TSSLKWILKV VMSMIFVTWV VFLMMMYPEQ LGDDFLTFVS  60
   61 SKTFLGTTGT MFLIFSCPIL VISVLASLYL IISGEDKVFT KKKISKFPRF RLWTFPVLVD 120
  121 GPFGVVSAAE FLGIMVFSVF FLWSIYAYTL RNLDLLERFH VLPKNRSILL LEVTGLRLGM 180
  181 IGLLCMVFLF LPISRGSILL RLIDIPFEHA TRYHVWLGHI TMAFFSLHGL CYVVGWIIQG 240
  241 QLLELIFSWN AIGIAILPGV ISLVAGLLMW VTSLHTVRKN YFELFFYTHQ LYIVFIVFLA 300
  301 LHVGDYMFSI VAGGIFLFIL DRFLRFCQSR RTVDVISAKS LPCGTLELVL SKPPNMRYNA 360
  361 LSFIFLQVRE LSWLQWHPFS VSSSPLDGNH HVAVLIKVLG GWTAKLRDQL SNLYEAENQD 420
  421 QLISPQSYPK ITTCVEGPYG HESPYHLAYE NLVLVAGGIG ITPFFAILSD ILHRKRDGKA 480
  481 CLPSKVLVVW AIKNSDELSL LSAIDIPSIC PFFSKKLNLE IHIYITRQSE PRLEDGMVHK 540
  541 VVHPSVKLPR TNGCSMSVLV GTGDNIWSGL YLIISTIGFI SMITLLDIFY IKRYNITTWW 600
  601 YKGLLFVGCM VASVLIFGGL VVVFWHRWEH KTGEVEANGN DKVDLNGEET HNPSAAELKG 660
  661 LAIEEDVQNY TTIRYGTRPA FREIFESLNG KWGSVDVGVI VCGPATLQTT VAKEIRSHSI 720
  721 WRSANHPLFH FNSHSFDL