YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	3HID3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYQSSSSLT QILHSFCGNT EMETPYPKLI DPSKTRIGWI GIGIMGSAMV SHIIAAGYSV  60
   61 TVYARDLRKT KDLQTKGARI ANSPKELAEM SDVVFTIVGN FNDVRSLLLG DDGVLSGLTP 120
  121 GGVTVDMTSS KPGLAREIHA EARRRNCWAV DAPVSGGDAG AREGTLGIFA GGDSEIVEWL 180
  181 SPVMKNIGTV TYMGEAGSGQ SCKIGNQIAG ASNLVGLAEG IVFAEKAGLD TVKWLEAVKD 240
  241 GAAGSAVMRL FGEMIVKRDY RATGFAEYMV KDLGMAAEAA MPGAALSKQL FTGMVANGDG 300
  301 KLGIQGVVSV IRRLNGIS

Type	Start	End	Confidence
Cytoplasmic	1	36	0.77
Transmembrane Helix	37	58	0.83
Non-Cytoplasmic	59	318	0.85