YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.99
Transmembrane Helix	42	64	0.89
Non-Cytoplasmic	65	72	0.89
Transmembrane Helix	73	96	0.86
Cytoplasmic	97	112	0.91
Transmembrane Helix	113	132	0.97
Non-Cytoplasmic	133	148	0.81
Transmembrane Helix	149	167	0.90
Cytoplasmic	168	187	0.90
Transmembrane Helix	188	209	0.88
Non-Cytoplasmic	210	235	0.89
Transmembrane Helix	236	257	0.80
Cytoplasmic	258	289	0.88
Transmembrane Helix	290	310	0.91
Non-Cytoplasmic	311	331	0.91
Transmembrane Helix	332	356	0.86
Cytoplasmic	357	366	0.88
Transmembrane Helix	367	391	0.86
Non-Cytoplasmic	392	405	0.81
Transmembrane Helix	406	427	0.93
Cytoplasmic	428	438	0.82
Transmembrane Helix	439	461	0.88
Non-Cytoplasmic	462	478	0.83
Transmembrane Helix	479	498	0.96
Cytoplasmic	499	510	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSDQDRRH RVTRNRPPIA RPSTSSSRPV VSPPRSKVSK RVLLRVASVA CGIQFGWALQ  60
   61 LSLLTPYVQE LGIPHAWASV IWLCGPLSGL FVQPLVGHSS DRCTSKYGRR RPFIVAGAVA 120
  121 ISISVMVIGH AADIGWAFGD REGKIKPRAI VAFVLGFWIL DVANNMTQGP CRALLADLTE 180
  181 NDNRRTRVAN GYFSLFMAVG NVLGYATGSY NGWYKIFTFT KTVACNVECA NLKSAFYIDV 240
  241 VFIAITTILS VSAAHEVPLA SLASEAHGQT SGTDEAFLSE IFGTFRYFPG NVWIILLVTA 300
  301 LTWIGWFPFI LFDTDWMGRE IYGGEPNIGT SYSAGVSMGA LGLMLNSVFL GITSVLMEKL 360
  361 CRKWGAGFVW GISNILMAIC FLGMIITSFV ASHLGYIGHE QPPASIVFAA VLIFTILGIP 420
  421 LAITYSVPYA LISIRIESLG LGQGLSLGVL NLAIVIPQVI VSVGSGPWDQ LFGGGNSPAL 480
  481 AVGAATGFIG GIVAILALPR TRIQKPIPLP