YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17979386
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSNNVIGC INFITVLLSI PVIGAGIWLA IGTVNSCVKL LQWPVIILGV LILLVGLAGF  60
   61 IGGFWRITWL LVVYLIAMLI LIVLLGCLVG FIYMVTIRGS GHPEPSRAYL EYSLQDFSGW 120
  121 LRRRVQRSYK WERIRTCLST TTICPELNQR YTLAQDFFNA HLDPIQSGCC KPPTKCGFTF 180
  181 VNPTYWVSPI DMSADMDCLN WSNDQNTLCY TCDSCKAGLL ANIKVDWLKA DIFLLLALIG 240
  241 LIIVYIIGCC AFRNAETEDI FRKYKQGYT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.49
Transmembrane Helix	8	32	0.88
Cytoplasmic	33	39	0.44
Transmembrane Helix	40	65	0.85
Non-Cytoplasmic	66	70	0.41
Transmembrane Helix	71	97	0.86
Cytoplasmic	98	231	0.50
Transmembrane Helix	232	252	0.92
Non-Cytoplasmic	253	269	0.47