YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21281225, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.89
Transmembrane Helix	72	95	0.87
Non-Cytoplasmic	96	101	0.65
Transmembrane Helix	102	120	0.90
Cytoplasmic	121	130	0.86
Transmembrane Helix	131	154	0.92
Non-Cytoplasmic	155	163	0.80
Transmembrane Helix	164	186	0.93
Cytoplasmic	187	226	0.91
Transmembrane Helix	227	247	0.89
Non-Cytoplasmic	248	258	0.81
Transmembrane Helix	259	280	0.92
Cytoplasmic	281	293	0.85
Transmembrane Helix	294	315	0.94
Non-Cytoplasmic	316	321	0.90
Transmembrane Helix	322	342	0.89
Cytoplasmic	343	365	0.77
Transmembrane Helix	366	387	0.81
Non-Cytoplasmic	388	415	0.92
Transmembrane Helix	416	438	0.88
Cytoplasmic	439	488	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSETLTLVL VYLAGIMERA DESLLPGVYK EVGDALHVDP TALGTLTLFR SIVQSSCYPL  60
   61 AAYLSSRHNR AHVIALGAFL WATATFLVAV STTFFQVAVS RGLNGIGLAI VTPAIQSLVA 120
  121 DSTDDYNRGM AFGWLGFTSN IGSILGYVCS ILFASKSFNG VAGWRIAFLL VAVVSVIVGI 180
  181 LVRLFATDPH YSDRKITKHV KDKPFWSDIR DLLKEAKMVI KIPSFQIFVA QGVSGSFPWS 240
  241 ALAFAPLWLE LIGFSHKTTA VLVTLFTISC SLGGLFGGYM GDTLAKKFPN GGRIFLSQVS 300
  301 SGSAIPLAAI LLIGLPDDPS TAFSHGLVLV IMGLCISWNG AATNGPIFAE IVPERARTSI 360
  361 YALDRSFESI LASFAPPIVG MLAQNIYGYK PIPEGSTSSV KIDTDRANAA SLAKALYTSI 420
  421 GIPMVICCTI YSFLYCTYPR DRDRAKMQAL IESEMQQLNE EEDEIEVKCF GAEEHDEAYL 480
  481 LKQHQNES