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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PAS1_ARATH
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV  60
   61 RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP TMHKGEIAMF KMKPEMHYAE 120
  121 IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA 180
  181 RISAKSGDGH VIFSHTEEPY FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL 240
  241 LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG 300
  301 MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK 360
  361 FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA DKIRSTGNRL FKEGKFELAK 420
  421 AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP 480
  481 GHVKGLYRRG MAYIAGGEYD DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK 540
  541 QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE 600
  601 KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle