YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y4052_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVVTKKTMK IQIHLLYSFL FLCFSTLTLS SEPRNPEVEA LISIRNNLHD PHGALNNWDE  60
   61 FSVDPCSWAM ITCSPDNLVI GLGAPSQSLS GGLSESIGNL TNLRQVSLQN NNISGKIPPE 120
  121 LGFLPKLQTL DLSNNRFSGD IPVSIDQLSS LQYLRLNNNS LSGPFPASLS QIPHLSFLDL 180
  181 SYNNLSGPVP KFPARTFNVA GNPLICRSNP PEICSGSINA SPLSVSLSSS SGRRSNRLAI 240
  241 ALSVSLGSVV ILVLALGSFC WYRKKQRRLL ILNLNDKQEE GLQGLGNLRS FTFRELHVYT 300
  301 DGFSSKNILG AGGFGNVYRG KLGDGTMVAV KRLKDINGTS GDSQFRMELE MISLAVHKNL 360
  361 LRLIGYCATS GERLLVYPYM PNGSVASKLK SKPALDWNMR KRIAIGAARG LLYLHEQCDP 420
  421 KIIHRDVKAA NILLDECFEA VVGDFGLAKL LNHADSHVTT AVRGTVGHIA PEYLSTGQSS 480
  481 EKTDVFGFGI LLLELITGLR ALEFGKTVSQ KGAMLEWVRK LHEEMKVEEL LDRELGTNYD 540
  541 KIEVGEMLQV ALLCTQYLPA HRPKMSEVVL MLEGDGLAER WAASHNHSHF YHANISFKTI 600
  601 SSLSTTSVSR LDAHCNDPTY QMFGSSAFDD DDDHQPLDSF AMELSGPR

Type	Start	End	Confidence
Signal Peptide	1	30	0.90
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	237	0.98
Transmembrane Helix	238	262	0.92
Cytoplasmic	263	648	0.90