YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.91
Transmembrane Helix	47	66	0.91
Cytoplasmic	67	78	0.80
Transmembrane Helix	79	97	0.91
Non-Cytoplasmic	98	104	0.69
Transmembrane Helix	105	124	0.86
Cytoplasmic	125	139	0.79
Transmembrane Helix	140	160	0.90
Non-Cytoplasmic	161	166	0.73
Transmembrane Helix	167	185	0.83
Cytoplasmic	186	194	0.64
Transmembrane Helix	195	215	0.83
Non-Cytoplasmic	216	224	0.70
Transmembrane Helix	225	247	0.86
Cytoplasmic	248	289	0.70
Transmembrane Helix	290	315	0.66
Non-Cytoplasmic	316	333	0.80
Transmembrane Helix	334	355	0.86
Cytoplasmic	356	372	0.78
Transmembrane Helix	373	393	0.90
Non-Cytoplasmic	394	401	0.65
Transmembrane Helix	402	423	0.92
Cytoplasmic	424	432	0.75
Transmembrane Helix	433	450	0.96
Non-Cytoplasmic	451	470	0.89
Transmembrane Helix	471	494	0.74
Cytoplasmic	495	539	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDGVENAK PPQKQEDLQP HPVKDQLYGI TYCLTSPPPW PETILLGFQH YLVMLGTTVL  60
   61 IPTMLVSKID ARNEDKVKLI QTLLFVSGIN TLFQSFFGTR LPAVIGASYS YVPTTMSIVL 120
  121 AARYNDIMDP QKRFEQIMRG IQGALIIASF LHILVGFSGL WRNVTRFLSP LSAVPLVAFS 180
  181 GFGLYEQGFP MLAKCIEIGL PEIILLVIFS QYIPHLMQGE TCSNFFHRFA VIFSVVIVWL 240
  241 YAYILTIGGA YSNTEINTQI SCRTDRAGII SASPWIRVPH PIQWGGAPTF NAGDIFAMMA 300
  301 ASFVSLVEST GTYIAVSRYA SATPIPPSVL SRGIGWQGFG ILLCGLFGAG NATSVSVENA 360
  361 GLLAVTRVGS RRVIQVAAGF MIFFSILGKF GAIFASIPAP IVAALYCLFF SYVGAGGLSL 420
  421 IQFCNLNSFR TKFILGFSIF MGLSIPQYFY QYTTLETYGP VRTSATWFNN IINVPFSSKA 480
  481 FVSGILAFFL DTTLPPKDKT TKKDRGLVWW KRFKSFQSDN RSEEFYSLPL NLSKYFPSH