YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DERL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPGEFYNS LPPITKAYGT LCFFTTVATQ LGLVAPVHIA LIPELVLKQF QIWRLITNLF  60
   61 FLGGFSINFG IRLLMIARYG VQLEKGPFER RTADFLWMMI FGSFTLLVLS VIPFFWTPFL 120
  121 GVSLVFMLLY LWSREFPNAN ISLYGLVTLK AFYLPWAMLA LDVIFGSPIM PDLLGIIAGH 180
  181 LYYFLTVLHP LATGKNYLKT PKWVNKIVAR WRIGAPVASV RQAGGVGAAG PGAGGGVGGG 240
  241 GAYSSARAPP ESSNTAFRGR SYRLTD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.81
Transmembrane Helix	20	42	0.90
Non-Cytoplasmic	43	51	0.82
Transmembrane Helix	52	76	0.84
Cytoplasmic	77	94	0.77
Transmembrane Helix	95	112	0.87
Non-Cytoplasmic	113	113	0.41
Transmembrane Helix	114	133	0.69
Cytoplasmic	134	140	0.58
Transmembrane Helix	141	166	0.68
Non-Cytoplasmic	167	172	0.48
Transmembrane Helix	173	193	0.73
Cytoplasmic	194	219	0.64
Transmembrane Helix	220	243	0.57
Non-Cytoplasmic	244	266	0.53