YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX23_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.49
Transmembrane Helix	48	69	0.56
Cytoplasmic	70	75	0.70
Transmembrane Helix	76	96	0.80
Non-Cytoplasmic	97	111	0.63
Transmembrane Helix	112	133	0.81
Cytoplasmic	134	145	0.76
Transmembrane Helix	146	166	0.95
Non-Cytoplasmic	167	173	0.82
Transmembrane Helix	174	194	0.87
Cytoplasmic	195	211	0.81
Transmembrane Helix	212	234	0.90
Non-Cytoplasmic	235	245	0.79
Transmembrane Helix	246	267	0.90
Cytoplasmic	268	283	0.82
Transmembrane Helix	284	308	0.89
Non-Cytoplasmic	309	332	0.77
Transmembrane Helix	333	353	0.86
Cytoplasmic	354	361	0.72
Transmembrane Helix	362	386	0.86
Non-Cytoplasmic	387	424	0.70
Transmembrane Helix	425	447	0.87
Cytoplasmic	448	469	0.74
Transmembrane Helix	470	489	0.43
Non-Cytoplasmic	490	867	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGAPLNVT NPNYDIEESR FGKIVCYDQS LLFEKREQKG WESGSTLASS LPFFITQLFV  60
   61 ANLSYRVLYY LTRPLYLPPF VAQILCGLLF SPSVLGNTRF IIAHVFPYRF TMVLETFANL 120
  121 ALVYNIFLLG LGMDLRMVRI TELKPVIIAF TGLLVALPVG AFLYYLPGNG HPDKIISGCV 180
  181 FWSVALACTN FPDLARILAD LKLLRSDMGR TAMCAAIVTD LCTWVLLVFG FASFSKSGTW 240
  241 NKMMPFVIIT TAIFVLLCIF VIRPGIAWIF AKTVKAGHVG DTHVWFILGG VVLCGLITDA 300
  301 CGVHSITGAF LFGLSIPHDH IIRNMIEEKL HDFLSGILMP LFYIICGLRA DIGFMLQFTD 360
  361 KFMMVVVICS SFLVKIVTTV ITSLFMHIPM RDAFAIGALM NTKGTLSLVV LNAGRDTKAL 420
  421 DSPMYTHMTI ALLVMSLVVE PLLAFAYKPK KKLAHYKHRT VQKIKGETEL RVLACVHVLP 480
  481 NVSGITNLLQ VSNATKQSPL SVFAIHLVEL TGRTTASLLI MNDECKPKAN FSDRVRAESD 540
  541 QIAETFEAME VNNDAMTVQT ITAVSPYATM HEDICVLAED KRVCFIILPY HKHLTPDGRM 600
  601 GEGNSSHAEI NQNVLSHAPC SVGILVDRGM AMVRSESFRG ESMKREVAML FVGGPDDREA 660
  661 LSYAWRMVGQ HVIKLTVVRF VPGREALISS GKVAAEYERE KQVDDECIYE FNFKTMNDSS 720
  721 VKYIEKVVND GQDTIATIRE MEDNNSYDLY VVGRGYNSDS PVTAGLNDWS SSPELGTIGD 780
  781 TLASSNFTMH ASVLVIQQYS ATKRQAAVTA AAATTVMGAV AGVTGNNLES AGGDAKMTRD 840
  841 AHEPFMKSMY EDEDEDDEED HQYGIHR