YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50747710
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARISVGFRR NLHPQGCSRS LAAALAPLGG PATSKTPLSA VSLSNISISL LSLVVTACGL  60
   61 ALFGVSLFVS WKLCWIPWRE RGLPFGNKDK QESLNYTDTE TNDHDYSEDY LGQPTTYPES 120
  121 SMKISHTSPD IPVDAQAGTK ENCVHNARMH RQITEPTSSA RHNSIRRQLN LSNPDFNIQQ 180
  181 VQKQEQLTGI GRIKPELYKQ RSVDTDDGRR SNSKACGKLN FILKYDCDLE QLIVKIHKAI 240
  241 NLPAKDFSGT SDPYVKIYLL PDRKTKHQTK VHRKTLNPVF DEVFLFSVPY NDLNARKLHF 300
  301 SVYDFDRFSR HDLIGQVVVD NFLDLADFPR ECNIWKDIEY VTNDNVDLGD LMFSLCYLPT 360
  361 AGRLTITIIK ARNLKAMDIT GASDPYVKVS LMCEGRRLKK RKTSTKRNTL NPVYNEAIVF 420
  421 DVPPENIDQI NLSIAVMDYD RVGHNEVIGV CQVGNDAESL GRDHWNEMLS YPRKPIAHWH 480
  481 PLAEGPIQQK CYAGLLRLDG CRRGFLTLLT YSAEIWHSC

Type	Start	End	Confidence
Cytoplasmic	1	20	0.56
Transmembrane Helix	21	35	0.48
Non-Cytoplasmic	36	49	0.64
Transmembrane Helix	50	71	0.71
Cytoplasmic	72	519	0.60