YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABAH1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISALFLTL FAGSLFLYFL RCLISQRRFG SSKLPLPPGT MGWPYVGETF QLYSQDPNVF  60
   61 FQSKQKRYGS VFKTHVLGCP CVMISSPEAA KFVLVTKSHL FKPTFPASKE RMLGKQAIFF 120
  121 HQGDYHAKLR KLVLRAFMPE SIRNMVPDIE SIAQDSLRSW EGTMINTYQE MKTYTFNVAL 180
  181 LSIFGKDEVL YREDLKRCYY ILEKGYNSMP VNLPGTLFHK SMKARKELSQ ILARILSERR 240
  241 QNGSSHNDLL GSFMGDKEEL TDEQIADNII GVIFAARDTT ASVMSWILKY LAENPNVLEA 300
  301 VTEEQMAIRK DKEEGESLTW GDTKKMPLTS RVIQETLRVA SILSFTFREA VEDVEYEGYL 360
  361 IPKGWKVLPL FRNIHHSADI FSNPGKFDPS RFEVAPKPNT FMPFGNGTHS CPGNELAKLE 420
  421 MSIMIHHLTT KYSWSIVGAS DGIQYGPFAL PQNGLPIVLA RKPEIEV

Type	Start	End	Confidence
Signal Peptide	1	22	0.69
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	467	0.92