YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPT_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.87
Transmembrane Helix	103	125	0.85
Non-Cytoplasmic	126	136	0.73
Transmembrane Helix	137	159	0.87
Cytoplasmic	160	171	0.73
Transmembrane Helix	172	186	0.59
Non-Cytoplasmic	187	187	0.17
Transmembrane Helix	188	202	0.48
Cytoplasmic	203	215	0.42
Transmembrane Helix	216	242	0.72
Non-Cytoplasmic	243	246	0.48
Transmembrane Helix	247	268	0.83
Cytoplasmic	269	279	0.64
Transmembrane Helix	280	300	0.93
Non-Cytoplasmic	301	316	0.61
Transmembrane Helix	317	336	0.66
Cytoplasmic	337	355	0.42
Transmembrane Helix	356	371	0.52
Non-Cytoplasmic	372	374	0.71
Transmembrane Helix	375	396	0.85
Cytoplasmic	397	410	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRVLLRAT ANVVGIPKLR RPIGAIHRQF STASSSSFSV KPIGGIGEGA NLISGRQLRP  60
   61 ILLLDSSAIN GGEKREILKP VKAAAAEGGD TAGDAKVGFL AKYPWLVTGF FFFMWYFLNV 120
  121 IFNILNKKIY NYFPYPYFVS VIHLFVGVVY CLISWSVGLP KRAPIDSNLL KVLIPVAVCH 180
  181 ALGHVTSNVS FAAVAVSFTH TIKALEPFFN AAASQFIMGQ SIPITLWLSL APVVLGVAMA 240
  241 SLTELSFNWL GFISAMISNI SFTYRSIFSK KAMTDMDSTN VYAYISIIAL FVCIPPAIIV 300
  301 EGPKLLNHGF ADAIAKVGMT KFISDLFWVG MFYHLYNQLA TNTLERVAPL THAVGNVLKR 360
  361 VFVIGFSIVI FGNKISTQTG IGTGIAIAGV AMYSIIKAKI EEEKRQGKKA