YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ICME_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSPLQTQQP EQRCWPMTST VSEIEEVLPD EDSDRTTLLN GEPLRRRVSG KSPVDEGPRR  60
   61 IFRQQSFGRD IGHAAAETYL ITGLSFKLLR YLGVGYRWMT KLLALTCYAM LLMPGFLQVA 120
  121 YSYFFSKQVR RSIVYGDQPR NRLDLYLPSN NDGLKPVVVF VTGGAWIIGY KAWGSLLGMQ 180
  181 LAERDIIVAC LDYRNFPQGT ISDMVTDASQ GISFVCNNIS AFGGDPNRIY LMGQSAGAHI 240
  241 AACALLEQAT KELKGESISW TVSQIKAYFG LSGGYNLYKL VDHFHNRGLY RSIFLSIMEG 300
  301 EESFEKFSPE VRLKDPVVGK AASLLPPIIL FHGSSDYSIP CDESKTFTDA LQAVGAKAEL 360
  361 VLYSGKTHTD LFLQDPLRGG KDELFDDIVS VIHAEDNDGL TKDSLAPPRK RLVPELLLKL 420
  421 AREISPF

Type	Start	End	Confidence
Cytoplasmic	1	101	0.83
Transmembrane Helix	102	121	0.88
Non-Cytoplasmic	122	427	0.59