YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APRL5_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRVSILFV CAIAVSCFTS GSASSPVDFS VCNYEFELFR FDLEAKCPPS LYPTPPIEVD  60
   61 GDSLDRLMAS QHGNAYMSVL FYASWCPFSR AVRPKFDMLS SMFPQIQHLA VEHSQALPSV 120
  121 FSRYGIHSLP SILMVNQTLN ARYHGRKDLI SLIEFYEEAT GLQPVQYVAE GEPTGLNAGD 180
  181 GNLITWLRKG TSIREIFKQD PFLVLSLLFI CLQMAILVFP IAESRMRALW ASYVANLNLG 240
  241 RFGEISQLFN RGIHMVDVRR LWLKLSLVKT RNFHERAKNA QAWASSLASV SLGQTSSDQS 300
  301

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	201	0.98
Transmembrane Helix	202	222	0.90
Cytoplasmic	223	300	0.91