YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBL6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR  60
   61 RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL ITAMWLHAGI IHLVMNMFDV 120
  121 IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT 180
  181 NWTIYKSKLC ALLSFLFIIA INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE 240
  241 FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY 300
  301 PTSKWSC

Type	Start	End	Confidence
Cytoplasmic	1	17	0.98
Transmembrane Helix	18	39	0.92
Non-Cytoplasmic	40	102	0.98
Transmembrane Helix	103	125	0.89
Cytoplasmic	126	132	0.84
Transmembrane Helix	133	154	0.92
Non-Cytoplasmic	155	160	0.76
Transmembrane Helix	161	180	0.93
Cytoplasmic	181	188	0.77
Transmembrane Helix	189	208	0.94
Non-Cytoplasmic	209	214	0.74
Transmembrane Helix	215	237	0.86
Cytoplasmic	238	257	0.95
Transmembrane Helix	258	280	0.91
Non-Cytoplasmic	281	307	0.97