YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLS_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIYRSLRKL VEINHRKTRP FFTAATASGG TVSLTPPQFS PLFPHFSHRL SPLSKWFVPL  60
   61 NGPLFLSSPP WKLLQSATPL HWRGNGSVLK KVEALNLRLD RIRSRTRFPR QLGLQSVVPN 120
  121 ILTVDRNDSK EEDGGKLVKS FVNVPNMISM ARLVSGPVLW WMISNEMYSS AFLGLAVSGA 180
  181 SDWLDGYVAR RMKINSVVGS YLDPLADKVL IGCVAVAMVQ KDLLHPGLVG IVLLRDVALV 240
  241 GGAVYLRALN LDWKWKTWSD FFNLDGSSPQ KVEPLFISKV NTVFQLTLVA GAILQPEFGN 300
  301 PDTQTWITYL SWLVASTTMA STAAYGVQYW KKRPISMIKR S

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	39	0.88
Non-Cytoplasmic	40	55	0.77
Transmembrane Helix	56	74	0.60
Cytoplasmic	75	156	0.67
Transmembrane Helix	157	180	0.65
Non-Cytoplasmic	181	226	0.54
Transmembrane Helix	227	249	0.68
Cytoplasmic	250	274	0.72
Transmembrane Helix	275	294	0.65
Non-Cytoplasmic	295	307	0.77
Transmembrane Helix	308	329	0.92
Cytoplasmic	330	341	0.94