YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50747071
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.88
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	148	0.98
Transmembrane Helix	149	168	0.90
Cytoplasmic	169	184	0.81
Transmembrane Helix	185	208	0.92
Non-Cytoplasmic	209	214	0.83
Transmembrane Helix	215	233	0.94
Cytoplasmic	234	286	0.99
Transmembrane Helix	287	307	0.91
Non-Cytoplasmic	308	324	0.94
Transmembrane Helix	325	346	0.90
Cytoplasmic	347	356	0.74
Transmembrane Helix	357	376	0.96
Non-Cytoplasmic	377	382	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYWLSVLPCV SCSVAGNTSA PGSAYPGLSA ALRGGRWERN AEAAAGCVWL HVAACGCVRP  60
   61 PGPHLAAPSS LLRASRLPER GSRRVCTALS DVELELDEKG LPKRYFSSPF AVHHFVEECS 120
  121 TGCSEAIKGP SPVAPVHLVN EESTDKTNLG FIHAFVAAIS VIIVSELGDK TFFIAAIMAM 180
  181 RYNRLTVLAG AMLALGLMTC LSVLFGYATT VIPRVYTYYV STALFAIFGI RMLREGLKMS 240
  241 PDEGQEELEE VQAEIKKKDE ELQRTKLLNG PGDVETGSTA TIPQKKWLHF ISPIFVQAFT 300
  301 LTFLAEWGDR SQLTTIVLAA REDPYGVAVG GTVGHCLCTG LAVIGGRMIA QKISVRTVTI 360
  361 IGGIVFLAFA FSALFISPDS GF