YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18417739, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTPPTSRIA SFGQTEINWD KLDKRRFYIN GAGLFTGVTV ALYPVSVVKT RLQVASKEIA  60
   61 ERSAFSVVKG ILKNDGVPGL YRGFGTVITG AVPARIIFLT ALETTKISAF KLVAPLELSE 120
  121 PTQAAIANGI AGMTASLFSQ AVFVPIDVVS QKLMVQGYSG HATYTGGIDV ATKIIKSYGV 180
  181 RGLYRGFGLS VMTYSPSSAA WWASYGSSQR VIWRFLGYGG DSDATAAPSK SKIVMVQAAG 240
  241 GIIAGATASS ITTPLDTIKT RLQVMGHQEN RPSAKQVVKK LLAEDGWKGF YRGLGPRFFS 300
  301 MSAWGTSMIL TYEYLKRLCA IED

Type	Start	End	Confidence
Cytoplasmic	1	26	0.89
Transmembrane Helix	27	46	0.77
Non-Cytoplasmic	47	79	0.78
Transmembrane Helix	80	102	0.62
Cytoplasmic	103	182	0.56
Transmembrane Helix	183	205	0.70
Non-Cytoplasmic	206	233	0.68
Transmembrane Helix	234	255	0.53
Cytoplasmic	256	323	0.47