YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20268776
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGCALHGG CPSDYVAVAI SVICFFVLLS RSVLPCLIHK APRTNSSSFW IPVIQVISSF  60
   61 NLLFSIMMSV NLLRFRTKHW WRYCYLWAVW IEGPLGFGLL MSCRITQAFQ LYFIFVKKRL 120
  121 PPVKSYIFLP LVLLPWIFGA AIIHATKPLN DKCHMGLQWT FPVAGLHALY VLALIAFTRA 180
  181 VRHVEFRFDE LRDLWKGILV SATSIVIWVT AFVLNEIHEE ISWLQVASRF VLLVTGGILV 240
  241 VVFFSISSNQ PLLSQISLKK RQNFEFQRMG QALGIPDSGL LFRKEEFRPV DPNEPLDKLL 300
  301 LNKRFRHSFM EFADSCYAGE TLHFFEEVYE HGKIPEDDSI RRIYMARHIM EKFIVAGAEM 360
  361 ELNLSHKTRQ EILTTQDLTH TDLFKNALNE VMQLIKMNLV RDYWSSIYFI KFKEEESCHE 420
  421 AMHKERYSFS SPRLSSVQGS DDPFYQEHMS KSSRCSSPG

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.80
Transmembrane Helix	15	35	0.89
Cytoplasmic	36	48	0.73
Transmembrane Helix	49	70	0.90
Non-Cytoplasmic	71	85	0.73
Transmembrane Helix	86	106	0.83
Cytoplasmic	107	125	0.69
Transmembrane Helix	126	145	0.96
Non-Cytoplasmic	146	158	0.76
Transmembrane Helix	159	181	0.85
Cytoplasmic	182	193	0.83
Transmembrane Helix	194	214	0.91
Non-Cytoplasmic	215	225	0.74
Transmembrane Helix	226	248	0.86
Cytoplasmic	249	459	0.85