YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50746583
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.79
Transmembrane Helix	90	107	0.82
Non-Cytoplasmic	108	116	0.51
Transmembrane Helix	117	139	0.62
Cytoplasmic	140	154	0.50
Transmembrane Helix	155	171	0.53
Non-Cytoplasmic	172	172	0.31
Transmembrane Helix	173	201	0.75
Cytoplasmic	202	208	0.72
Transmembrane Helix	209	230	0.85
Non-Cytoplasmic	231	237	0.63
Transmembrane Helix	238	257	0.76
Cytoplasmic	258	283	0.83
Transmembrane Helix	284	302	0.61
Non-Cytoplasmic	303	308	0.53
Transmembrane Helix	309	327	0.48
Cytoplasmic	328	338	0.67
Transmembrane Helix	339	359	0.66
Non-Cytoplasmic	360	374	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCGAPHRPA GSAAGDGKMA ALLAGFTRAS CRFHAARPAL VAAAAALPLR CPAAPLGPPR  60
   61 PLSFSAAELV RAAPGPLRPY LHLMRLHQPA GTWLLYLPCT WSIGLAAEPG CLPDWHMLAL 120
  121 FGAGAVLMRG AGCTINDLWD RDYDKQVART AGRPLAAGEI STFQSFVFLG GQLSLALCVL 180
  181 LCLNYYSIIL GAASLSLVVT YPLMKRITYW PQLVLGLTFN WGALLGWSAI HGSCDWSVCL 240
  241 PLYFSGVMWT LVYDTIYAHQ DKRDDIVIGV KSTALKFKED TKQWLSGFST AMVSGLCVAG 300
  301 MNCDQTFPYY SAVAAVGAHL AYQIYTLDID KPEDCWKKFA SNRTVGVLLF VGIVLGNLWK 360
  361 RKNSETVEEP LESR