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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50746483
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKERRPYC SLTKSRRDKE RRYTNSSAEN EECRVPTQKS YSSSETLKAF DHDSSRLLYG  60
   61 NRVKDLVHRE ADEYTRQGQN FTLRQLGVCE PATRRGLAFC AEMGLPHRGY SISAGSDADT 120
  121 ENEGVMSPEH AMRLWGRGVK SGRSSCLSSR SNSALTLTDT EHENKSDSEN GPPMPSSSSS 180
  181 PSVTEHLHSP PPSPNLHDNQ RWLLSNNASQ PVQDSDTDED YTASSFLVQT GTVSVSVPGH 240
  241 EQPPNNQGQS TLQPLPPSHK QHSAQHHPSI TSLNRNSLTN RRNQSPAPPA ALPAELQTTP 300
  301 ESVQLQDSWV LGSNAPLESR HFLFKTGTGT TPLFSTATPG YTMASGSVYS PPTRPLPRNT 360
  361 LSRSAFKFKK SSKYCSWKCT ALCAVGVSVL LAILLSYFIE FIRIRQHHPD TDSVHAKSSA 420
  421 DPRGSPGASS SCPAEENEVL IVYHSMHLFG LNWQLQQTEN DTFENGKVNS DTVPTHPVTV 480
  481 PAGENGKLGG FAQENNTIDS GELDIGRRAI QEVPPGIFWR SQLFIDQPQF LKFNISLQKD 540
  541 ALIGVYGRKG LPPSHTQVLK VISQDVEVLV TQSPSSGESL IVYAGLYFKG PGHYDFVELL 600
  601 DGSRLIAREQ RTLLEAERAG RQTRSVSLHE AGFIQYLDSG IWHLAFYNDG KNAEQVSFNT 660
  661 IIIESVVECP RNCHGNGECV SGSCHCFPGF LGPDCSRAAC PVLCSGNGQY SKGRCLCYSG 720
  721 WKGTECDVPA TQCIDPQCGG RGICIMGSCA CNSGYKGENC EEADCLDPAC SSHGVCIHGE 780
  781 CHCNPGWGGS NCEILKTLCP DQCSGHGTYL QESGTCTCDP NWTGPDCSNE ICSVDCGTHG 840
  841 VCMGGTCRCE DGWTGAACNQ RACHPRCAEH GTCKDGKCEC SQGWNGEHCT IEGCPGLCNS 900
  901 NGRCTLDQNG WHCVCQPGWR GAGCDVAMET LCTDSKDNEG DGLVDCMDPD CCLQSSCQNQ 960
  961 PYCRGLPDPQ DIISQSQQSP SQQAAKAFYD RISFLIGADS THVIPGESPF NRSLASVIRG1020
 1021 QVLTADGTPL IGVNVSFLHY PDYGYTITRQ DGMFDLVANG GASLTLVFER SPFLTQYHTV1080
 1081 WIPWNVFYVM DTLVMKKEEN DIPSCDLSGF VRPNPIIVSS PLSTFFRISP EDSPVIPETQ1140
 1141 VLHEETTIPG TDLKLSYLSS RAAGYKSVLK ITMTQSVIPF NLMKVHLMVA VVGRLFQKWF1200
 1201 PASPNLAYTF IWDKTDAYNQ RVYGLSEAVV SVGYEYESCL DLTLWEKRTA ILQGYELDAS1260
 1261 NMGGWTLDKH HVLDVQNGIL YKGNGENQFI SQQPPIVSSI MGNGRRRSIS CPSCNGQADG1320
 1321 NKLLAPVALA CGIDGSLYVG DFNYVRRIFP SGNVTSVLEL SNNPAHRYYL ATDPVTGDLY1380
 1381 VSDTNTRRIY RPRSLAGAKD LTKNAEVVGG TGEQCLPFDE ARCGDGGKAV EATLMSPKGI1440
 1441 AIDKNGLIYF VDGTMIRKVD QNGIISTLLG SNDLTSARPL TCDTSMHISQ VRLEWPTDLA1500
 1501 INPMDNSIYV LDNNVVLQIT ENRQVRIAAG RPMHCQVPGV EYTVGKHAVQ TTLESATAIA1560
 1561 VSYSGVLYIT ETDEKKINRI RQVTTDGEIS LVAGIPSECD CKNDVNCDCY QSGDGYAKDA1620
 1621 KLNAPSSLAV SPDGTLYIAD LGNIRIRAVS KNRPLLNSVN FYEVASPTDQ ELYIFDVNGT1680
 1681 HQYTVSLVTG DYLYNFSYSN DNDITSVTDS NGNTLRIRRD PNRMPSLRHR CLFARARLAK1740
 1741 SLTESSDVSK EEGRDNVLAG GYKHSKDTRR NEKLFSGEGA CSVLQVPEKL MCNLLLRNIR1800
 1801 DWLNGFAMKP LTGDRSEDSA VTYDSEGRLT NVTFPTGVVT NLHGEMERAI TVDIESSSRE1860
 1861 EDVSITSNLS SIDSFYTMVQ DQLRNSYQIG YDGSLRILYA SGLDSHYQTE PHVLAGTANP1920
 1921 TVAKRNMTLP GENGQNLVEW RFRKEQAQGK VNVFGRKLRV NGRNLLSVDF DRTTKTEKIY1980
 1981 DDHRKFLLRI AYDTSGHPTL WLPSSKLMAV NVTYSSTGQI GSIQRGTTSE KIEYDGQGRI2040
 2041 VSRVFADGKT WSYTYLEKSM VLLLHSQRQY IFEYDLLDRL SAVTMPSVAR HTMQTIRSIG2100
 2101 YYRNIYNPPE SNASVIMDYN EEGQLLQTAF LGTSRRVLFK YRRQTKLSEI LYDSTRVSFT2160
 2161 YDETAGVLKT VNLQSDGFIC TIRYRQIGPL IDRQIFRFSE DGMVNARFDY SYDNSFRVTS2220
 2221 MQGVINETPL PIDLYQFDDI SGKVEQFGKF GVIYYDINQI ISTAVMTYTK HFDAHGRIKE2280
 2281 IQYEIFRSLM YWITIQYDNM GRVTKREIKI GPFANTTKYA YEYDVDGQLQ TVYLNEKIMW2340
 2341 RYNYDLNGNL HLLNPSSSAR LTPLRYDLRD RITRLGDVQY RLDEDGFLRQ RGTEIFEYSS2400
 2401 KGLLTRVYSK GSGWTVIYRY DGLGRRVSSK TSLGQHLQFF YADLTYPTRI THVYNHSSSE2460
 2461 ITSLYYDLQG HLFAMEISSG DEFYIASDNT GTPLAVFSSN GLMLKQIQYT AYGEIYFDSN2520
 2521 LDFQLVIGFH GGLYDPLTKL VHFGERDYDI MAGRWTTPDI EVWKRIGKDP APFNLYMFRN2580
 2581 NNPASKIHDV KDYITDVNSW LVTFGFHLHN AIPGFPVPKF DLTEPSYELV KSQQWEDIPA2640
 2641 SASMLMLEVK WMLIQLKWLQ LFSHPISGVQ QQVARQAKAF LSLGKMAEVQ VSRRKSSGEK2700
 2701 SWLWFATVKS LIGKGVMLAV NQGKVQTNVL NIANEDCIKV AAVLNNAYYL ENLHFTVEGK2760
 2761 DTHYFIKTTS PESDLGTLRL TSGRKALENG INVTVSQSTT VVNGRTRRFA DVEMQYGALA2820
 2821 LHVRYGMTLD EEKARILEQA RQRALSSAWA REQQRVRDGE EGARLWTEGE KRQLLSAGKV2880
 2881 QGYDGYYVLS VEQYPELADS ANNIQFLRQS EIGKR

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