YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19424007
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSRIVSLHHQ KPFLALKLRP RPSNISGLGH STSVVCFNPL RLSADRQRTA TVSARAEKRR  60
   61 KRGSSVVCYA TPMLSVHNLQ WISTISCVAL MFARGTGIHK SFVVPLFALQ APMGIVSWMK 120
  121 GEYGIWAAFL ALLTRLFFSF PVELELPFIA LLLVIVAPYQ VMSIRGKQEG AILSLAISCF 180
  181 LAFQHFSRAG TLQKAFDQNS VLATVAIIGV TVVSFLFLI

Type	Start	End	Confidence
Cytoplasmic	1	78	0.77
Transmembrane Helix	79	98	0.55
Non-Cytoplasmic	99	100	0.33
Transmembrane Helix	101	121	0.56
Cytoplasmic	122	122	0.28
Transmembrane Helix	123	142	0.58
Non-Cytoplasmic	143	143	0.28
Transmembrane Helix	144	162	0.81
Cytoplasmic	163	169	0.47
Transmembrane Helix	170	189	0.87
Non-Cytoplasmic	190	198	0.43
Transmembrane Helix	199	218	0.94
Cytoplasmic	219	219	0.54