YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40782189
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.88
Transmembrane Helix	30	52	0.70
Non-Cytoplasmic	53	56	0.66
Transmembrane Helix	57	75	0.60
Cytoplasmic	76	86	0.45
Transmembrane Helix	87	109	0.70
Non-Cytoplasmic	110	120	0.63
Transmembrane Helix	121	145	0.88
Cytoplasmic	146	154	0.67
Transmembrane Helix	155	177	0.89
Non-Cytoplasmic	178	189	0.64
Transmembrane Helix	190	210	0.93
Cytoplasmic	211	245	0.72
Transmembrane Helix	246	267	0.86
Non-Cytoplasmic	268	274	0.61
Transmembrane Helix	275	299	0.79
Cytoplasmic	300	311	0.66
Transmembrane Helix	312	336	0.88
Non-Cytoplasmic	337	344	0.66
Transmembrane Helix	345	364	0.95
Cytoplasmic	365	370	0.70
Transmembrane Helix	371	391	0.91
Non-Cytoplasmic	392	399	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQGSLSTSF PQHTPKAPKN SVLNSIKIVI FCNKLNLLLP FGPLAILVHY MIDSKGWVFL  60
   61 LTLVGITPLA ERLGYATEQL ACYTGPTVGG LLNATFGNVT ELIISIFALK NGMIRVVQLT 120
  121 LLGSILSNML LVLGCAFFCG GLVFYQKDQV FDKGIATVNS GLLLMAVMGI LFPAVLHYTH 180
  181 SEVHAGSSEL ALSRFSSCIM LIAYAAYLFF QLKSQSNSYS PLDEESNQNE ETSAEDEDPE 240
  241 ISKWEAIIWL SILTAWVSLL SGYLVDAIEG ASVSWNIPIA FISTILLPIV GNAAEHAGAI 300
  301 MFAMKDKLDL SLGVAIGSSI QISMFAVPFC VVIGWMMGQQ MDLNFQLFET AMLFITVIVV 360
  361 AFFLQEGSSN YFKGLMLILC YLIVAASFFV HEDPHQDGI