YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAMC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLTLSVDV KSSSATSHDV SKRVMQSSQL KINKGFFASV NTQEDKPFDF FRTLFEGFIA  60
   61 GGTAGVVVET ALYPIDTIKT RLQAARGGGK IVLKGLYSGL AGNIAGVLPA SALFVGVYEP 120
  121 TKQKLLKTFP DHLSAVAHLT AGAIGGLAAS LIRVPTEVVK QRMQTGQFTS APSAVRMIAS 180
  181 KEGFRGLYAG YRSFLLRDLP FDAIQFCIYE QLCLGYKKAA RRELSDPENA LIGAFAGALT 240
  241 GAVTTPLDVI KTRLMVQGSA KQYQGIVDCV QTIVREEGAP ALLKGIGPRV LWIGIGGSIF 300
  301 FGVLESTKRT LAQRRPNTVK ETKEE

Type	Start	End	Confidence
Cytoplasmic	1	94	0.63
Transmembrane Helix	95	116	0.89
Non-Cytoplasmic	117	134	0.88
Transmembrane Helix	135	154	0.94
Cytoplasmic	155	229	0.95
Transmembrane Helix	230	250	0.70
Non-Cytoplasmic	251	287	0.74
Transmembrane Helix	288	307	0.79
Cytoplasmic	308	325	0.77