YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22330288, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	35	0.91
Non-Cytoplasmic	36	72	0.95
Transmembrane Helix	73	94	0.91
Cytoplasmic	95	109	0.73
Transmembrane Helix	110	130	0.87
Non-Cytoplasmic	131	142	0.76
Transmembrane Helix	143	162	0.90
Cytoplasmic	163	182	0.89
Transmembrane Helix	183	202	0.90
Non-Cytoplasmic	203	248	0.93
Transmembrane Helix	249	272	0.84
Cytoplasmic	273	289	0.88
Transmembrane Helix	290	310	0.92
Non-Cytoplasmic	311	324	0.81
Transmembrane Helix	325	345	0.89
Cytoplasmic	346	403	0.91
Transmembrane Helix	404	418	0.90
Non-Cytoplasmic	419	424	0.76
Transmembrane Helix	425	444	0.88
Cytoplasmic	445	463	0.86
Transmembrane Helix	464	484	0.94
Non-Cytoplasmic	485	500	0.83
Transmembrane Helix	501	521	0.87
Cytoplasmic	522	533	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTHNNRYAK WKQRELVLIL LYAIAFYAYV VWRSLRLSHD HYFKLHGLAS GWLIPNRRND  60
   61 VSDAQWRNFR GNLPILSFVF AVFTVIANGV RSFFHLRAKG MAILWLSMSL IYLIYLHGAC 120
  121 VIYILSIATA NFLLVKVFAR TSYFPYMLWT FNIFFLFCNR IYEGYSFSIF GQQFEFLDNF 180
  181 RGTFRWHICF NFVVLRMLSF GYDYHWSQLD SHFDQEKHVM RCSLCKLGKT CYVVRQERGL 240
  241 ASDSCSFSLY LCYLVYAPLY LAGPIISFNA FASQLDMPQN TLSFKDVAWY GVRWLFSFLL 300
  301 IELMTHLFYY NAFVISGLWR ELSPVEIFIV GYGVLNFMWL KFLLLWRYFR FWSLVNGIET 360
  361 VENMPNCINN CYSLELFWKT WHASFNRWLI RYMYIPLGGS RRKFLNVWVV FTFVAMWHDL 420
  421 EWKLLSWAWL TCLFFMPEML LKSASSAYKV ESAFGEFLLR ELKALSGAVT ITCLMIANLA 480
  481 GYVIGPSGIN WMVSSFLKRE GVPVLGGVFF SLYVGTKLMF HIQDLRSVAH SPK