YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18377979
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQSDHMNNTI HVTNKKLPNF LLSVRLKYVK LGYHYLISNA VYILILPVGL LAATSSSFSL  60
   61 TDLTLLYNHL LKFHFLSSTL FAALLIFLTT LYFTTRPRRI FLLDFACYKP DSSLICTRET 120
  121 FMDRSQRVGI FTEDNLAFQQ KILERSGLGQ KTYFPEALLR VPPNPCMSEA RKEAETVMFG 180
  181 AIDAVLEKTG VNPKDIGILV VNCSLFNPTP SLSAMIVNKY KLRGNVLSYN LGGMGCSAGL 240
  241 ISIDLAKQLL QVQPNSYALV VSTENITLNW YLGNDRSMLL SNCIFRMGGA AVLLSNRSSD 300
  301 RCRSKYQLIH TVRTHKGSDD NAFNCVYQRE DNDDNKQIGV SLSKNLMAIA GEALKTNITT 360
  361 LGPLVLPMSE QLLFFATLVA RKVFNVKKIK PYIPDFKLAF EHFCIHAGGR AVLDEIEKNL 420
  421 DLSEWHMEPS RMTLNRFGNT SSSSLWYGLA YSEAKGRIKR GDRTWQIAFG SGFKCNSAVW 480
  481 RALRTIDPSK EKKKKTNPWI DEIHEFPVPV PRTSPVTSSS ESR

Type	Start	End	Confidence
Cytoplasmic	1	31	0.96
Transmembrane Helix	32	54	0.88
Non-Cytoplasmic	55	72	0.82
Transmembrane Helix	73	93	0.95
Cytoplasmic	94	225	0.96
Transmembrane Helix	226	246	0.79
Non-Cytoplasmic	247	523	0.75