YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50745638
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAANARPAV GRLWSGKASA ESGVVRVRQF NFSSAPAGGG FSFSTPKTAA STTAATGFSF  60
   61 TPAPSSGFTF GGAAPTPASS QPVTPFSFST PASSALPTAF SFGTPATATT AAPAASVFPL 120
  121 GGNAPKLNFG GTSTTQATGI TGGFGFGTSA PTSVPSSQAA APSGFMFGTA ATTTTTTTAA 180
  181 QPGTTGGFTF SSGTTTQAGT TGFNIGATST AAPQAVPTGL TFGAAPAAAA TTTASLGSTT 240
  241 QPAATPFSLG GQSSGLNFGS LISTAATGAP TATLTASTSQ GPTLSFGSKL GVTTTASTTT 300
  301 AASTAPLLGS TGPVLFASIA SSSAPASSTS TGLSLGAPST GTTGLGTSGF GLKPPGTTAA 360
  361 ATSTATSTSA SSFALNLKPL TTTGTIGAVT STAAITTTTP SAPPVMTYAQ LESLINKWSL 420
  421 ELEDQEKHFL HQATQVNAWD RTLIENGEKI TSLHREVEKV KLDQKRLDQE LDFILSQQKE 480
  481 LEDLLTPLEE SVKEQSGTIY LQHADEERER TYKLAENIDA QLKRMAQDLK DIIEHLNTSG 540
  541 RPADTSDPLQ QICKILNAHM DSLQWIDQNS ALLQRKVEEV TKVCESRRKE QERSFRITFD 600
  601

Type	Start	End	Confidence
Cytoplasmic	1	56	0.69
Transmembrane Helix	57	74	0.40
Non-Cytoplasmic	75	97	0.55
Transmembrane Helix	98	120	0.55
Cytoplasmic	121	131	0.41
Transmembrane Helix	132	150	0.50
Non-Cytoplasmic	151	218	0.48
Transmembrane Helix	219	239	0.52
Cytoplasmic	240	254	0.38
Transmembrane Helix	255	276	0.59
Non-Cytoplasmic	277	600	0.70