YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50745525
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVMVARKKV VRKWEKLPGR NTFCCDGRIM MARQKGIFYL TLFLILGTCA LFFAFECRYL  60
   61 AVQLSPAIPV FAAVLFLFAM ATLLRTSFSD PGVIPRALPD EAAFIEMEIE ATNGTVPQGQ 120
  121 RPPPRIKNFQ INNQIVKLKY CYTCKIFRPP RASHCSICDN CVERFDHHCP WVGNCVGKRN 180
  181 YRYFYLFILS LSLLTIYIFT FDIVYVALKS LKIGFLNTLK ETPGTVLEVL ICFFTLWSVV 240
  241 GLTGFHTFLV ALNQTTNEDI KGSWTGKNRV QNPYSHGNMV KNCCEVLCGP LPPSVLDRRG 300
  301 ILQQEENAAQ EETCTRGPSA QEPTAAQGPG GQAEESSTQQ DGSLPHQSAV PVPSLSNAEM 360
  361 PEEKQLPTGE LPALSQDAGQ AEH

Type	Start	End	Confidence
Cytoplasmic	1	36	0.98
Transmembrane Helix	37	55	0.97
Non-Cytoplasmic	56	66	0.65
Transmembrane Helix	67	86	0.92
Cytoplasmic	87	182	0.98
Transmembrane Helix	183	206	0.87
Non-Cytoplasmic	207	225	0.91
Transmembrane Helix	226	250	0.80
Cytoplasmic	251	383	0.95