YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18389248
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.42
Transmembrane Helix	14	48	0.68
Cytoplasmic	49	66	0.56
Transmembrane Helix	67	88	0.85
Non-Cytoplasmic	89	108	0.67
Transmembrane Helix	109	129	0.91
Cytoplasmic	130	143	0.66
Transmembrane Helix	144	169	0.81
Non-Cytoplasmic	170	177	0.52
Transmembrane Helix	178	197	0.69
Cytoplasmic	198	207	0.52
Transmembrane Helix	208	231	0.67
Non-Cytoplasmic	232	251	0.97
Transmembrane Helix	252	273	0.95
Cytoplasmic	274	295	0.89
Transmembrane Helix	296	318	0.91
Non-Cytoplasmic	319	337	0.96
Transmembrane Helix	338	361	0.85
Cytoplasmic	362	371	0.93
Transmembrane Helix	372	390	0.92
Non-Cytoplasmic	391	396	0.80
Transmembrane Helix	397	417	0.93
Cytoplasmic	418	439	0.91
Transmembrane Helix	440	458	0.96
Non-Cytoplasmic	459	465	0.82
Transmembrane Helix	466	487	0.89
Cytoplasmic	488	505	0.82
Transmembrane Helix	506	528	0.89
Non-Cytoplasmic	529	533	0.69
Transmembrane Helix	534	554	0.54
Cytoplasmic	555	569	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTATSFVT GERVVVFVVV SRILLSLPLS LISHGFSLFL LSLSAFLVEI RVETSPFLLS  60
   61 HFSSRRGASS GILLGAVTLP SVMISKLVQL SRAISIHEAE QDELAHVTMQ YWAASASCCA 120
  121 ILIYLSVIMS QVRKDESLSS SSIWLTRVSL TGTVLYGVAC FVSLSMISHT GLNTSLKMLW 180
  181 MLFHGLAAVK LIRHLLCTFP SCASIGEALL VTSGLVLYFG DFLACTIAKI FEKLIPVDLV 240
  241 SISYGIKRTE TGIIVQGLLL GLLLFPMVFR FVLHIYESSL RKRDARQRNC SDAAKSVLFF 300
  301 VSLLFFMVVA VPSWMQFVHD FNQHPFLWVL TFVFSEPLKR LSLCIYWILL IVVSVSRFYN 360
  361 ISRSSKVERI LLRKYYHLMA VLMFLPALVL QPKFLDLAFG AALAVFVALE VIRIWRIQTL 420
  421 GEPLHQFMNA FTDHRDSEHL IVSHFSLLLG CALPIWMSSG FNDRALSPFA GILSLGIGDT 480
  481 MASMVGHKYG VLRWSKTGKK TVEGTAAGIT SMMAVCFVLV PILASMGYIL SQGWWSLLVA 540
  541 VTATGMLEAY TAQLDNAFIP LVFYSLLCL