YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18377749
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKRRTVKES TKIRNGKGMD SGEKKRSEKR LMKFEELPRY LKDNEFIHNH YRCEWSIKET  60
   61 FLSAFSWHNE TLNIWTHLCG FAIFTWMMVV SSMETTELGL AGFVSLLSGA TIRWPWPSIA 120
  121 MSKDVYFSSD QTLHHDLNVT HTRSLLNSQG DVNYEAIPKW PWLVFLTGAM GCLICSSMSH 180
  181 LFACHSRRFN LFFWRLDYAG ISLMIVCSFF APIYYAFSCH TYWRLFYLSS ISILGLLAIF 240
  241 TLLSPSLSAP RFRSFRAALF LTMGFSGVIP ATHVLYLHKD HPNVLIALVY ELAMAVLYAT 300
  301 GAAFYVTRIP ERWKPGAFDI AGHSHQIFHV FVVLGALAHS VASLLIMDFR RASPSCAF

Type	Start	End	Confidence
Non-Cytoplasmic	1	70	0.53
Transmembrane Helix	71	90	0.79
Cytoplasmic	91	97	0.51
Transmembrane Helix	98	116	0.69
Non-Cytoplasmic	117	161	0.91
Transmembrane Helix	162	184	0.92
Cytoplasmic	185	193	0.85
Transmembrane Helix	194	216	0.90
Non-Cytoplasmic	217	224	0.75
Transmembrane Helix	225	244	0.95
Cytoplasmic	245	256	0.72
Transmembrane Helix	257	277	0.93
Non-Cytoplasmic	278	285	0.81
Transmembrane Helix	286	307	0.93
Cytoplasmic	308	326	0.87
Transmembrane Helix	327	347	0.93
Non-Cytoplasmic	348	358	0.86