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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18377660
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.42
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR  60
   61 EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY QLIGVSEQAE KDEVVKSVIN 120
  121 LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL 180
  181 CLLQEVGQEK LVLDIGRAAL RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL 240
  241 ARAQSFLKSK VTLGKLALLT QIEESLEGLA PPCTLDLLGL PRTPENAERR RGAIAALREL 300
  301 LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI 360
  361 DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG VDLKFEEAFC SFLLKQGSEA 420
  421 EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF 480
  481 FRAEKKYPEN KKMGSPSIMN HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK 540
  541 NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS 600
  601 GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH 660
  661 PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW ENVKAEALGP THQVYSLSEV 720
  721 LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV 780
  781 DESQPKNAKY YSTYKIRYIL KKQEDGLWKF CQSDIQIQK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle