YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIN2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKYLPVSV ASTALSFVGL QVWTELSLDR LRADGLIAKN ISLGDSEHAL ELLLGSYFTI  60
   61 ALLTNFVLNV YILLVLSLKT LFFGDLYDVE TKKLVERLAN YIIYKGTFLP LVIPPTIFQG 120
  121 VLWTVWLTVL CTLKMFQALA RDRLERLNAS PSSTPWTYFR VYSVLFLVLS VDMFWIKLSL 180
  181 MTYNTIGSAV YLLLLFEPCS IAFETLQALL IHGFQLLDMW INHLAVKNSD CQRSKFIDSM 240
  241 TAGSLLEWKG LLNRNLGFFL DMATLVMALG HYLHIWWLHG IAFHLVDAVL FLNIRALLSA 300
  301 ILKRIKGYIK LRIALGALHA ALPDATSEEL RAYDDECAIC REPMAKAKRL HCNHLFHLGC 360
  361 LRSWLDQGLN EVYSCPTCRK PLFVGRTENE VNPRTVEVSS DEQLARQLER QNNPVHALAT 420
  421 GLFPAEVPDS VENDTSRNLG LDPSWLQTWS SQGSDVAGPS TTSRTVGLGR VQMMMRHLAS 480
  481 VGESYAQTAL DDAAWSLWPM NPSQASTSST TVPPGNGGRT GGLHLRTVSN TTNESLTNIL 540
  541 AMAETVREVM PHVPDEIIFQ DLQRTNSVAV TVNNLLQM

Type	Start	End	Confidence
Cytoplasmic	1	52	0.75
Transmembrane Helix	53	75	0.86
Non-Cytoplasmic	76	115	0.85
Transmembrane Helix	116	136	0.90
Cytoplasmic	137	155	0.89
Transmembrane Helix	156	176	0.92
Non-Cytoplasmic	177	188	0.73
Transmembrane Helix	189	211	0.81
Cytoplasmic	212	254	0.89
Transmembrane Helix	255	275	0.87
Non-Cytoplasmic	276	280	0.74
Transmembrane Helix	281	302	0.87
Cytoplasmic	303	578	0.88