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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50744999
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.35
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAGGSNL VIEKRESGQN TARPYPLTGG SSVARAGLPR RLPEGSRCSW PGPAEPSVSG  60
   61 TATLERCSQP LKLAFPATKN TNTTQPNSRS KQTNCTLPLL CCCSPPFCSV EHSKYCVKMA 120
  121 SLMNQSLLTY AEEGNVPALK ALLEKCRDVD ERNECSELEN VDPSLTLWME MISAAGHCFF 180
  181 VHRDSYMYII VELTSWLDQD AQGLSRETSG SAEDGGPAAP YNGVPVLNHW LLRNISSDLF 240
  241 ALQKNGQTPL MLAAEQGNLE IVQELLKKGA NCNLEDADNW TALISAAKEG HEAIVAELLN 300
  301 YGVNLEHRDL GGWTALMWAS YKGRTEVAKL LLEKGANPNI TGMQYSVYPI IWAAGRGHSD 360
  361 IVHLLLQHGA KVNCSDKYGT TPLVWAARKG HLDCVKYLLQ MGADVDQEGA NSMTALIVAV 420
  421 KGGYTDSVKE ILKRNPNVNL TDKDGNTALM IASKEGHTEI VQDLLDAGTY VNIPDRDNKT 480
  481 ALYWAVEKGN ATMVRDILQC NPDTETYTKD GETPLIKATK MRNIEIVELL LDKGAKVSAV 540
  541 DKKGDTPLHI AIRGRSRKLA ELLLRNPKDG RLLYRPNKAG ETPYNIDCSH QKSILTQIFG 600
  601 ARHLSPTESD GDMLGYDLYS SALADILSEP TMQPPICVGL YAQWGSGKSF LLKKLEDEMK 660
  661 TFAGQQIEPL FQFSWLIVFL TLLLCGGLGL LLAFTVDAKL GIAVSLSLLA VLYIFFTVIY 720
  721 FGGRREGESW NWAWVLSTRL ARHIGYLELL LKLMFVNPPE LPEQTTKALP VRFLFTDYNR 780
  781 LSSVGGETSL AEMIATLSDA CEREFGFLAT RLFRVFKTED TQGKKKWKKT CCLPSFVIFL 840
  841 FILSCVVSAI ALLAIFNVEP TNMTVNAILI SVTCVVGLAF ILNCRTWWQV MDSVLNSQRK 900
  901 RLHHAASKLH KLKSEGFMKV LKCEVELMAK MAKTIDSFTQ NQTRLVVIID GLDACEQDKV 960
  961 LQMLDTVRVL FSKGPFIAIF ASDPHIIIKA INQNLNSVLR DSNINGHDYM RNIVHLPVFL1020
 1021 NSRGLSNAKK LMVASTTNGD VPYTDNAGLH EEIDRRVSQN SLGEMTKLGS KTALNRRDTY1080
 1081 RRRQMQRTIT RQMSFDLTKL LVTEDWFSDI SPQTMRRLLN IVSVTGRLLR ANQITFNWDR1140
 1141 LASWINLTEQ WPYRTSWLIL HLEETEGVPD QLTLKTIYER ISKNIPTTKD VEPLLEIDGD1200
 1201 IRNFEVFLSS RTPVLVARDV RTFLPCTVNL DPKLREIIAD VRAARDQMNI GGLPYPTLPL1260
 1261 HEAPARAASL FSQPSSACSS TTSFNGPFNS GVLSPQPHSS YYSGMTGPQH PFYNRGIHNK1320
 1321 TKAFTSKPNS NSWIGRNQNL TVLERPFLNV LLVVRYYPGS SHLISRPLKT SLSRDQSNGL1380
 1381 DVIKEDADEG LSSPTDPSMG GGAGAGATTG VSHVSLSTMS VEAVCEKLKQ IDGLDQSMLP1440
 1441 QYSAIIRKAN INGRVLAQCN TDELKKEMNM NFGDWHLFRS MILEMRNSEN QAVQEDPRGA1500
 1501 AEHVTTAISH SELARRPGHS TELPHTELTG LSGQAPYTLN FSFEELNTIG LDEAPPRHSN1560
 1561 LSWQSQTRRT PSLSSLNSQD SSIEISKLTD KVQAEYRDAY REYIAQMSQL EGGASSTTVS1620
 1621 GRSSPHSSSA FYMGQSTSGG SLHSSAEQEK VKDGEQKQDD GRKSFLLKRN DVIDYSTSGV1680
 1681 STNDASPLDP ITEEDEKSDQ SGSKLLLGKK SSERTSIFQA ADLKLKGVTL RYQKLPSDED1740
 1741 ESGTEESDNT PLLKEGKDKK TDGKVDKQPK SPEHGSEPIR TFIKAKEYLT DALLDKKDSS1800
 1801 DSGVRSNESS PNHSLHNEGT DDSQLEKANL IELEDDSNSG KRGIPHSLSG LQDPAVVRMS1860
 1861 ICSEDKKSPS ESSLIASSPE ENWPACQKVY NLNRTPSTVT LNNNSAPNNR ANQNFEEMQG1920
 1921 MRDPSQIILN PSSGSNSTAV QNENLKSVAH KRSQRSSYTR LSKDSSELHT VTASDGAGFG1980
 1981 EERESIL

YRC Informatics Platform - Version 3.0
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