YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50744682
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPPLCLFP GHPHSSVSTL YNAGRVQRGD KELIASPRCV CLCDRRDLPF SRLHDALRAV  60
   61 VSFILNVKII TLEPKLTSGK SSGLREQPRK PAFKNSSSVG FVSHSVSDYC TVFSSYLPPF 120
  121 SPSTARFCFL LPGLCGSSGA RGDCGSVQPG AAPGSARHNS APGWTFLPLL QQMNKYMRSD 180
  181 RLWGRRGKKS VPVFLSLPRA ESANVDDAVT EKRFLVFCVM MHTAGFVPVR EPTVVLYSSI 240
  241 PSRTLGFMSR KRYSYSVKRG SDANTVFVWK IFLADRIFIK DPAQLADDFC CAIRLQKGTT 300
  301 ELVLQQLGID SIYILYMHTN TYGPKLQHIS PYSYTRKESK EQIMTSTSKG IFRPFFIVFI 360
  361 VLGCFMAFIL IYIKPTSSWI SNPVESASSV LKMKSFFSSK TDNFNETIIL VWLWPFGQTF 420
  421 DLTSCQTMFN IHGCHLTIDR SLYNKSHAVL IHHRDINWDL TNLPQQARPP FQKWIWMNLE 480
  481 SPTHTPQKSG IEHLFNLTLT YRRDSDIQVP YGSMIVGTGA FTYEVPSKEN LVCWVVSNWN 540
  541 PEHARVKYYN ELSKYIEIHT YGQAFGDYVN DKNLIPTISS CKFYLSFENS IHKDYITEKL 600
  601 YNALLAGSVP VVLGPSRENY ENYIPADSFI HVEDFLSPRE LAEYLLMLDK NNKMYLSYFN 660
  661 WRKDFSVHLP KFWESHACLA CDHVKRHQEY KSIGNLEKCL PAGLTWSGRA AMAADWEEIR 720
  721 RLAADFQRAQ FAEAAHRLSE RNCIEIVTKL IAEKQLEVVH TLDGKEYVTP AQISKEIWDE 780
  781 LSVCGGRINI VDLQQIINVD LLHIENRAND IVKSDKAVQL VLGQLINESY LDQLAEEIND 840
  841 KLQETGQVTI SELCKAYDLP GDFLTQALSK RLGRIIHGRL DQENRGVIFT EAFVSRHRAR 900
  901 IRGLFSAITR PTPVSNLITR YGFQEHLLYS VLEELVNTSR LKGTVVGGRQ DKAVFVPDIY 960
  961 ARTQSNWVDS FFKQNGYLEF DALYRLGIPD PAGYIKKRYK STKLLFLRAA CVGQEIVDRV1020
 1021 EASVDEVISS GSWIDVATLL PSSLSVEDIG ILLQQVMRSL NKNSSGLVFS DTIVVSEKFI1080
 1081 SSCTDLFSDM MKQKAEKEMK NSPVHLITEE DLKQSYVLEN SYTNKKDKKD ERRKKATEGS1140
 1141 GSVRGGGGGN AREIKIKKTK KKGRKDADSD EESQATSTGR NKQLEFHFMS QEEMQDVLKT1200
 1201 HLQDCPEELI TELAEHLMRP LTKSYQEVVR SVFTSSTSSS GASRRQTMKD LQEEFSNLYN1260
 1261 NIRLFEKGTK YFTDETQTNL AKHLLKTVCT DITNLIFNFL ASDSMMTTEN YSTITSEVRT1320
 1321 KILGKLPEDT RGPLTKLHTS LNGKSLEDFL SYLDAAADIC DIMVKKGDKK KERQVLFQHR1380
 1381 QALIEQLKVT EDPALVLHLT AVLLFQFSTH CMLHAPGRSV PQIINFLSGK IPEDQHSLLI1440
 1441 KYQGLVVKQL ISQSKKAEQE DDNKTEEEEG ADTIRKELQE ITTSVKDLVL RPRKSSVTEE1500
 1501 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle