YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50742608
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPGGGSGPM KDCEYSQIST HSSSSPMESP HKKKKTAPKR KWEVFPGRNK FFCNGRIMMA  60
   61 RQTGVFYLTL VLILVTSGLF FTFDCPYLSE KITPAIPAIG GILFFFVMGT LLRTSFSDPG 120
  121 VLPRATPDEA ADLERQIDIA NGSSSGGYRP PPRTKEVIIN GQTVKLKYCF TCKIFRPPRA 180
  181 SHCSLCDNCV ERFDHHCPWV GNCVGKRNYR FFYMFILSLS FLTVFIFAFV ITHVILRSQQ 240
  241 AGFLNALKDS PASVLEAVVC FFSVWSIVGL SGFHTYLISS NQTTNEDIKG SWSNKRGKEN 300
  301 YNPYSYGNIF TNCCAALCGP LSPSLIDRRG FIQPDTPQLA GPSNGITMYG ATQSQSNMAA 360
  361 ATPLLQSEPS INSEELPLPG KTSISGPCAT LTLGQPTPPS SMPNLTSDTG LTDMIPLKEE 420
  421 HEGHQFLTPE EAPSPPGMLP SGSPITHSHT MHVLSLASQD SLHEDSVRGL VKLSSV

Type	Start	End	Confidence
Cytoplasmic	1	63	0.98
Transmembrane Helix	64	83	0.95
Non-Cytoplasmic	84	93	0.76
Transmembrane Helix	94	114	0.93
Cytoplasmic	115	210	0.98
Transmembrane Helix	211	235	0.89
Non-Cytoplasmic	236	253	0.91
Transmembrane Helix	254	276	0.72
Cytoplasmic	277	476	0.66