YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17104707, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.84
Transmembrane Helix	18	38	0.89
Non-Cytoplasmic	39	72	0.81
Transmembrane Helix	73	92	0.75
Cytoplasmic	93	101	0.62
Transmembrane Helix	102	123	0.91
Non-Cytoplasmic	124	163	0.69
Transmembrane Helix	164	187	0.73
Cytoplasmic	188	197	0.71
Transmembrane Helix	198	221	0.84
Non-Cytoplasmic	222	270	0.90
Transmembrane Helix	271	291	0.91
Cytoplasmic	292	305	0.86
Transmembrane Helix	306	326	0.87
Non-Cytoplasmic	327	334	0.80
Transmembrane Helix	335	354	0.94
Cytoplasmic	355	362	0.79
Transmembrane Helix	363	385	0.76
Non-Cytoplasmic	386	401	0.75
Transmembrane Helix	402	425	0.88
Cytoplasmic	426	433	0.77
Transmembrane Helix	434	450	0.57
Non-Cytoplasmic	451	474	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEKKDDGV MAEEKPYMFW IWTLASTIFR LFLIFSPANI NLSSRPEVST PHTSLRRLAE  60
   61 GYWLKQSSLS PYAGSMYHGS PLLLSILGPL TVQRIEGQSS HHLCSLVFVI ADLLSALLLR 120
  121 AIGQKLQKSY RMNLRPLGVL RSSQDRGILP CGDIAALVYL WNPFTILSCV GLSTSPIENL 180
  181 AVIVSLYGAV TRRVPLAAFG LIMATHLSLY SAPLVFPLIF LLGYGLDAPP IKKFLQTRHG 240
  241 GVETGSTSDV SKQEKLTPTT QLPFSWRTVL HFVFWVLVWS SYVLVLCSLS LKQYGGLEEM 300
  301 FKRTYGFILR IEDLSPNIGV FWYFFAEAFE FSRNYLLIIF NLYILLTSIP SLMFRLKHRP 360
  361 CFLAFAYLAF TSILKSYPSV GDAALYLSLW ALFVNELTDM EYSFFIFCGY IGFSLLSPVM 420
  421 HNFWIWRGTG NANFYFGNAM GYACFQFMFV EKSVNAMLNH DQALKKATAE MTKN