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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50738580
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGDVPDICS GCSDGTVRGT LLWVPFHSAS MEKWCSLTSS LEIRKLMPTT SELVERSGNQ  60
   61 SCKTPTVHAE QESTNLHDDK NQPCMEAAEK AIGLMKLSLQ RLQCYLESLL RKENEDNINR 120
  121 VPLGCSAALA FRNAGNPRFW SCDAPEAEVG VRLHPLDAQM FLFLVFPCRI HITLPQTVCA 180
  181 VCHGQSRILA AVACLLFPTL IHSQSMSYGW KKVAGPGQQK AQGDGDNKHG NLRAPTASLR 240
  241 ANERLCRRNP HARKITANAS RRGDNDDDKK PHISRYVASI SVQILKLRAL LLEELQFYRI 300
  301 EADFPAVQEF CWLLCASRQR WVAWSSTSTA ETQAPGSLST GRGNVYIWEP RSTVNSQFLG 360
  361 STKEGPKLPV VLNKCCRLGV FPVSLGLMNS TGLQESQQHD PVPGTIPSCS LLSCSTLAPT 420
  421 QMQSQHQTTC RPQAFHQGTM QAGTPPAIAV AVRACGSEAD HERKSGKGMQ NRFGSLIPIG 480
  481 RRKMAPRDDE ENQSSDYRHV CALGADLVPQ FDVLLGVILF TFPMGISLFC SPEEANLPVL 540
  541 GVQPLHSTRQ EQPRNARCCL WQDAAGSWAA IDAMARSVCS ADVVLMVDSL KPVWPPRRCQ 600
  601 SSGQMCHIAS VPFPYSGDDG VRSQPRALRR QRSPPFSGTR LPEQSQVCLN STWADLQLAG 660
  661 VLGVGESDGS LKHWGSQTSL GLLPLGRHLC ANCAMLWVRR STAVGVMDEL FADVPKPLLH 720
  721 LPTFMSHLAR SLKCGLFFKP LKNLMLNDFS FKVLHQGMTG KEGSYAASYN SGNSRAGTWL 780
  781 CVEGRHGGTC FITGSTSSAC LQSRYSCTLK LRSVVFQCPS PLSSAGGLVA MLLYAGRALD 840
  841 EAQVLDNALG RFGGVLVGCQ QWGELVSGIE EVPNTRRDSE KALEMQKKES AGTLSMCCDV 900
  901 QQHSGRLEKS LSAWKNNKYV ELKLLSLITS ADMTSKTEQR CAKNAMENSQ LFLLTLLKQS 960
  961 FTLQHQCKAK EGSYEALSYS VENDGKWSGR QLLQANEDNT TEGPGDGGKL YVRNCTEPVL1020
 1021 QERLLRTAIH KDPMSTHGKD GDFSSSRGAA AVLPEKHREE RSGFPRCQIT PKSTLQLLYV1080
 1081 KVKAHSRKVS NSEEDWVLLR KSKADLTEMM FKAQLLQEKR TRHNEVRVLG DAQNQRQTTQ1140
 1141 CLGAERMEIC IADVLRLPVP SVGGGSMVTE GHTRSSYCSR RLQIGVKRAA FDNKDSILSS1200
 1201 AIICHENEAC THSLLVYYCA ISRVPVNWYA HMNVCTEVNA PITALLCSHM SASWIAGFLV1260
 1261 LLQLSEFISK QNENKIEEQH YVGPHPMPKS RTYGTSIVPC DQTGHSGGSA ESEALALMQF1320
 1321 AKCLQGLQAS YGLVNGFGTL ASVLNIWRVF VTTSCAFLLP YIRGLVHVKD LSEEGNDFCH1380
 1381 SVPPSIGSCT QPLQTLHEFP NDIFTNEDRR HGAVILHVIC VSFVTLRFFS YQFGLDLAMY1440
 1441 MFYALAIVCD DFFVPSLEKI CEVYLEPNQS PSCLKLFVPT FVRLLFGVAT RWSAREMFPP1500
 1501 LSAAFPMLVK WQLLTGTHRL HLSEDVAGAT FMAAGSSAPE LFTSVIGVFI TKGDVGVGTI1560
 1561 VGSAVFNILC IIGVCGLFAG QWSLNVLHVG SHQLGGHFQD DPGASLQIQA IDEQHRLQSG1620
 1621 SSEAEAFLNA VCCMDFKLCF ILGAVNELAP TPAPCSTPED VQTLLSPMFH FPPERGNKCA1680
 1681 RLTGCFIGTV TSGGEQAGGR ISAITGAEQG RPKVMNGKVE SLCFVRGNVP WEMKPHKAVP1740
 1741 EGEAFDGFTR GTGLVIAACF FSLFCCIAGL LRDSIYYTLS VVALIVFIYD EKVSWWESLV1800
 1801 LVLMYAIYIV IMKYNSTIQH CLERKTKNAA NMVNGLANNT EMDDNSNCDA TVVLLKKGNF1860
 1861 HRKASVIMVD ELLSAYPHQL SFSEAGLRIM ITSHFPPKTR LSMASRMLIN ERQRLINSRT1920
 1921 YTNGESEVAI KIPIKHVVEN GTGPSNSSER GVNGTRRDED VAEAGNETEN ENEDNENNEN1980
 1981 DEEEEEDDDD DDHEGPYTPF DLPTGKMEIL KWLFTWPLSF VLYFTVPNCN KPHLEKWFMV2040
 2041 TFASSTLWIA AFSYMMVWMV TIIGYTLGIP DVIMGITFLA AGTSVPDCMA SLIVARQGMG2100
 2101 DMAVSNSIGS NVFDILIGLG LPWALQTLAV NYGSYIRLNS RGLIYSVGLL LASVFVTVFG2160
 2161 VHMNKWKLDK KLGCVCLSLY GIFLCFSIMT EFNVFTFVNL PMCRDH

YRC Informatics Platform - Version 3.0
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