YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50738259
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQPPPPKP WENRRLVGSV APAFQSPDLG DNLLTRPGQP TVARIPPPIL PRPSQQTGSS  60
   61 TLSTLRPAYS SSFTTGYGSY GTSFYGNYSP YSYGYGGLGY NRFRTDDIPP SRFVQQAEES 120
  121 SRGAFQSIES IVHAFASVSM MMDATFSAVY NSFRAVLDVA NHFSRLKVHF TKVFSAFALV 180
  181 RTIRYLYQRL QRLLGLRKSS ENEDLWAESQ GAVARVGLED KAANSAKSWP IFLFFAVIMG 240
  241 GPYLIWKLLS TYSDEESVSS NWASGEDDHV VGRADYDFSA LSEEEISFRA GDILKLAPKD 300
  301 QQPKIRGWLL ASFDGQTTGL VPANYIRILG KRRGRKTVDL ERITEQHPSF TGTSARGSTA 360
  361 AVTLEEQEAA FDSVFAGSNK VPVASDSTAV SGEKQEL

Type	Start	End	Confidence
Cytoplasmic	1	130	0.72
Transmembrane Helix	131	150	0.49
Non-Cytoplasmic	151	167	0.54
Transmembrane Helix	168	185	0.42
Cytoplasmic	186	228	0.76
Transmembrane Helix	229	246	0.81
Non-Cytoplasmic	247	397	0.86